STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ61783.13-hydroxyisobutyrate dehydrogenase. (291 aa)    
Predicted Functional Partners:
SKA21677.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.739
SKA02612.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.720
SJZ61799.1
Hypothetical protein.
       0.678
SJZ81595.1
FAD/FMN-containing dehydrogenase.
    
  0.630
SJZ61230.1
D-lactate dehydrogenase.
    
  0.630
SJZ61765.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
       0.594
SKA44132.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
    0.562
SKA41250.1
Hypothetical protein.
  
     0.536
SKA19662.1
Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
 
 0.509
ahpD
Alkyl hydroperoxide reductase subunit D; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
 
 0.509
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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