STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA13907.1Outer membrane protein beta-barrel domain-containing protein. (233 aa)    
Predicted Functional Partners:
SKA32220.1
Glycine betaine/proline transport system ATP-binding protein.
  
 0.992
SKA32216.1
Glycine betaine/proline transport system permease protein.
  
 
 0.903
SKA19339.1
Hypothetical protein.
  
     0.746
SKA21057.1
Tetratricopeptide repeat-containing protein.
 
     0.737
SKA39659.1
Putative porin.
  
     0.727
SJZ52334.1
Hypothetical protein.
  
     0.725
SJZ52521.1
Hypothetical protein.
  
     0.720
SJZ55841.1
Hypothetical protein.
  
     0.719
SKA41866.1
pRiA4b ORF-3-like protein.
  
     0.717
SKA31692.1
Protein of unknown function.
  
     0.705
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.