Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ46155.1 | SJZ70084.1 | SAMN04488128_101316 | SAMN04488128_1011262 | Glycine C-acetyltransferase. | L-threonine aldolase. | 0.835 |
SJZ46155.1 | SJZ97378.1 | SAMN04488128_101316 | SAMN04488128_102108 | Glycine C-acetyltransferase. | L-threonine aldolase. | 0.790 |
SJZ46155.1 | gcvP | SAMN04488128_101316 | SAMN04488128_101627 | Glycine C-acetyltransferase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.892 |
SJZ46155.1 | glyA | SAMN04488128_101316 | SAMN04488128_102591 | Glycine C-acetyltransferase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.848 |
SJZ46155.1 | ilvA | SAMN04488128_101316 | SAMN04488128_101599 | Glycine C-acetyltransferase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.442 |
SJZ46155.1 | kbl | SAMN04488128_101316 | SAMN04488128_1021388 | Glycine C-acetyltransferase. | 2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. | 0.802 |
SJZ70084.1 | SJZ46155.1 | SAMN04488128_1011262 | SAMN04488128_101316 | L-threonine aldolase. | Glycine C-acetyltransferase. | 0.835 |
SJZ70084.1 | SJZ97378.1 | SAMN04488128_1011262 | SAMN04488128_102108 | L-threonine aldolase. | L-threonine aldolase. | 0.843 |
SJZ70084.1 | SKA32151.1 | SAMN04488128_1011262 | SAMN04488128_103596 | L-threonine aldolase. | Threonine synthase. | 0.865 |
SJZ70084.1 | SKA33522.1 | SAMN04488128_1011262 | SAMN04488128_103850 | L-threonine aldolase. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.738 |
SJZ70084.1 | SKA43435.1 | SAMN04488128_1011262 | SAMN04488128_106185 | L-threonine aldolase. | Threonine synthase. | 0.853 |
SJZ70084.1 | gcvP | SAMN04488128_1011262 | SAMN04488128_101627 | L-threonine aldolase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.906 |
SJZ70084.1 | glyA | SAMN04488128_1011262 | SAMN04488128_102591 | L-threonine aldolase. | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.877 |
SJZ70084.1 | ilvA | SAMN04488128_1011262 | SAMN04488128_101599 | L-threonine aldolase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.858 |
SJZ70084.1 | kbl | SAMN04488128_1011262 | SAMN04488128_1021388 | L-threonine aldolase. | 2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. | 0.759 |
SJZ97378.1 | SJZ46155.1 | SAMN04488128_102108 | SAMN04488128_101316 | L-threonine aldolase. | Glycine C-acetyltransferase. | 0.790 |
SJZ97378.1 | SJZ70084.1 | SAMN04488128_102108 | SAMN04488128_1011262 | L-threonine aldolase. | L-threonine aldolase. | 0.843 |
SJZ97378.1 | SJZ97394.1 | SAMN04488128_102108 | SAMN04488128_102109 | L-threonine aldolase. | Two component regulator propeller. | 0.757 |
SJZ97378.1 | SKA32151.1 | SAMN04488128_102108 | SAMN04488128_103596 | L-threonine aldolase. | Threonine synthase. | 0.829 |
SJZ97378.1 | SKA33522.1 | SAMN04488128_102108 | SAMN04488128_103850 | L-threonine aldolase. | Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.738 |
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