STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA15497.1Hydroxypyruvate isomerase. (298 aa)    
Predicted Functional Partners:
SKA16716.1
Hydroxypyruvate isomerase.
  
  
 
0.848
SJZ45811.1
Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.761
SJZ56952.1
Lactate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.761
SKA21706.1
Nucleoside transporter.
 
     0.746
SKA34015.1
Nucleoside transporter.
 
     0.742
SKA33908.1
Protein of unknown function.
 
   
 0.724
SKA32109.1
Gluconate 2-dehydrogenase subunit 3.
 
     0.666
SJZ56671.1
Xylose isomerase-like TIM barrel.
 
  
  0.643
SKA07675.1
Protein of unknown function.
 
   
 0.634
SKA19976.1
Protein of unknown function.
 
   
 0.618
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.