STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA02646.1Muramoyltetrapeptide carboxypeptidase. (303 aa)    
Predicted Functional Partners:
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
  
  
  0.748
SKA47124.1
Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling).
  
     0.732
SKA21677.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.724
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.596
SKA00968.1
Cell division protein FtsI (penicillin-binding protein 3).
     
 0.501
SKA16981.1
Beta-glucosidase.
 
   
 0.480
SJZ55156.1
Uncharacterized conserved protein YbbC, DUF1343 family.
  
     0.468
SJZ84339.1
Uncharacterized conserved protein YbbC, DUF1343 family.
  
     0.466
SKA47820.1
Uncharacterized conserved protein YbbC, DUF1343 family.
  
     0.438
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.