STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA08356.1Hypothetical protein. (239 aa)    
Predicted Functional Partners:
SJZ83675.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
 0.922
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.922
SKA37110.1
Amino acid adenylation domain-containing protein.
  
 0.922
SKA37911.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 0.922
SKA35781.1
Thioesterase domain-containing protein.
  
 0.922
SKA48831.1
Amino acid adenylation domain-containing protein/natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 0.922
SKA48978.1
Phosphopantetheine attachment site.
  
 0.922
SKA37897.1
Methyltransferase domain-containing protein.
  
 0.906
SKA48624.1
HxxPF-repeated domain-containing protein.
  
 0.885
SKA37083.1
Amino acid adenylation domain-containing protein.
  
 0.881
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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