Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA10978.1 | SKA10992.1 | SAMN04488128_102855 | SAMN04488128_102856 | Cytosine/adenosine deaminase. | MscS family membrane protein. | 0.761 |
SKA10978.1 | prfA | SAMN04488128_102855 | SAMN04488128_102854 | Cytosine/adenosine deaminase. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.605 |
SKA10992.1 | SKA10978.1 | SAMN04488128_102856 | SAMN04488128_102855 | MscS family membrane protein. | Cytosine/adenosine deaminase. | 0.761 |
SKA10992.1 | gcvP | SAMN04488128_102856 | SAMN04488128_101627 | MscS family membrane protein. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.564 |
SKA10992.1 | prfA | SAMN04488128_102856 | SAMN04488128_102854 | MscS family membrane protein. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.533 |
gcvP | SKA10992.1 | SAMN04488128_101627 | SAMN04488128_102856 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | MscS family membrane protein. | 0.564 |
prfA | SKA10978.1 | SAMN04488128_102854 | SAMN04488128_102855 | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | Cytosine/adenosine deaminase. | 0.605 |
prfA | SKA10992.1 | SAMN04488128_102854 | SAMN04488128_102856 | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | MscS family membrane protein. | 0.533 |