STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA30383.1Uncharacterized membrane protein HdeD, DUF308 family. (188 aa)    
Predicted Functional Partners:
SKA30296.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
  
 0.615
SKA43249.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
  
 0.615
SKA47711.1
Choloylglycine hydrolase.
  
    0.521
SKA30389.1
Delta-9 acyl-phospholipid desaturase.
       0.505
SJZ64499.1
Choloylglycine hydrolase.
  
    0.464
glsA
L-glutaminase; Belongs to the glutaminase family.
  
    0.460
SJZ79069.1
Surface antigen.
  
     0.426
SKA30374.1
Hypothetical protein.
       0.417
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.