STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA33986.1Transcriptional regulator, GntR family. (492 aa)    
Predicted Functional Partners:
SKA33990.1
Hypothetical protein.
 
    0.712
SJZ83675.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
 
 0.471
SKA37110.1
Amino acid adenylation domain-containing protein.
  
 
 0.471
SKA37911.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.471
SKA35781.1
Thioesterase domain-containing protein.
  
 
 0.471
SKA48831.1
Amino acid adenylation domain-containing protein/natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
  
 
 0.471
SKA48978.1
Phosphopantetheine attachment site.
  
 
 0.471
SKA37897.1
Methyltransferase domain-containing protein.
   
 
 0.465
SKA48624.1
HxxPF-repeated domain-containing protein.
   
 
 0.461
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.