STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA29282.1Glycosyltransferase involved in cell wall bisynthesis. (381 aa)    
Predicted Functional Partners:
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.835
SKA29251.1
Mannose-1-phosphate guanylyltransferase.
  
 
 0.802
SKA29273.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.791
SKA29277.1
O-Antigen ligase.
  
 
 0.787
SKA29297.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.783
SKA29284.1
Succinoglycan biosynthesis protein ExoV.
  
 
  0.766
gmd-2
GDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
 
 0.764
SKA29305.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
  0.755
SKA29294.1
Hypothetical protein.
       0.752
SKA29330.1
Colanic acid biosynthesis glycosyl transferase WcaI.
 
     0.746
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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