STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA36592.1Hypothetical protein. (639 aa)    
Predicted Functional Partners:
SKA36550.1
Hypothetical protein.
 
 
 0.999
SKA36546.1
Baseplate J-like protein.
 
 
 0.998
SKA36542.1
Hypothetical protein.
 
 
 
 0.997
SKA36564.1
Hypothetical protein.
 
 
 0.997
SKA36578.1
Conserved hypothetical phage tail region protein.
 
 
 0.997
SKA36586.1
Conserved hypothetical phage tail region protein.
 
 
 0.997
SKA36608.1
Protein of unknown function.
 
 
 
 0.997
SKA40989.1
Phage baseplate assembly protein W.
  
 
 0.993
SKA36569.1
Hypothetical protein.
   
   0.986
SKA18556.1
LysM domain-containing protein.
  
 
 0.975
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.