STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA35764.1CubicO group peptidase, beta-lactamase class C family. (490 aa)    
Predicted Functional Partners:
SKA35750.1
Cyclic peptide transporter.
 
    
0.790
SKA30707.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.773
SJZ60776.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.763
SKA35744.1
Acyl carrier protein.
       0.745
SKA35772.1
Aspartate racemase; Belongs to the aspartate/glutamate racemases family.
 
    0.683
SKA35781.1
Thioesterase domain-containing protein.
  
  
 0.674
SJZ48318.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.649
SKA35768.1
Diaminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.623
SKA45475.1
CubicO group peptidase, beta-lactamase class C family.
  
     0.539
SKA35787.1
Putative glucoamylase.
       0.504
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.