STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA40804.1SusD family protein. (437 aa)    
Predicted Functional Partners:
SKA40808.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.935
SJZ97044.1
Lysophospholipase L1.
   
  0.612
SKA04332.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.582
SJZ69445.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.489
SKA37915.1
Subtilase family protein.
  
   0.485
SKA44234.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.482
SJZ96310.1
TIGR03118 family protein.
  
   0.469
SKA41490.1
Thioredoxin-like domain-containing protein.
  
 
   0.456
SKA14751.1
Chitinase.
  
  
 0.449
SKA36277.1
Thioredoxin-like domain-containing protein.
  
 
   0.438
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.