STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA41349.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
SKA45535.1
GxGYxY sequence motif-containing protein.
  
     0.721
SJZ39483.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
  
     0.716
SKA36845.1
RNA ligase, DRB0094 family.
  
     0.687
SJZ96541.1
Protein of unknown function.
  
     0.611
SKA41347.1
Hypothetical protein.
 
     0.598
SKA12833.1
Transglutaminase-like superfamily protein.
  
     0.582
SKA03895.1
TonB-dependent receptor.
  
     0.573
SJZ62312.1
TonB-dependent receptor.
  
     0.568
SKA12808.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.561
SKA47261.1
Carbohydrate binding module (family 6).
  
     0.560
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.