STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA42778.1TonB-linked outer membrane protein, SusC/RagA family. (1093 aa)    
Predicted Functional Partners:
SKA42783.1
Starch-binding associating with outer membrane.
 
     0.935
SJZ71463.1
Starch-binding associating with outer membrane.
 
     0.782
SKA43965.1
Starch-binding associating with outer membrane.
  
     0.761
SKA01644.1
Starch-binding associating with outer membrane.
  
     0.760
SJZ75675.1
Starch-binding associating with outer membrane.
  
     0.756
SKA40724.1
Starch-binding associating with outer membrane.
  
     0.753
SKA45498.1
SusD family protein.
  
     0.753
SJZ75728.1
Starch-binding associating with outer membrane.
  
     0.752
SKA47285.1
Starch-binding associating with outer membrane.
  
     0.747
SJZ48950.1
Starch-binding associating with outer membrane.
  
     0.744
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.