STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA46247.1Hexosaminidase. (743 aa)    
Predicted Functional Partners:
SKA14751.1
Chitinase.
    
 0.713
SKA16981.1
Beta-glucosidase.
    
 0.692
SJZ40470.1
Hexosaminidase.
  
  
 
0.640
SKA13095.1
Carbohydrate binding domain-containing protein.
 
  
 0.622
SKA41735.1
Hexosaminidase.
  
  
 
0.603
SKA01665.1
Hexosaminidase.
  
  
 
0.597
SKA44553.1
Hexosaminidase.
  
  
 
0.597
SKA13021.1
Alpha-1,2-mannosidase, putative.
  
     0.581
SKA46843.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.569
SJZ77951.1
Hexosaminidase.
  
  
 
0.559
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.