STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA45617.1Two component transcriptional regulator, LytTR family. (232 aa)    
Predicted Functional Partners:
SKA45615.1
Histidine kinase.
 
   0.933
SKA15217.1
Histidine kinase.
  
  0.853
SKA23411.1
Two component regulator propeller.
  
  0.828
SKA33287.1
Histidine kinase.
  
  0.819
SKA46977.1
Histidine kinase.
  
  0.818
SKA36448.1
Histidine kinase.
  
  0.817
SKA28789.1
Histidine kinase.
  
  0.815
SJZ69590.1
Histidine kinase.
 
   0.811
SKA41879.1
Two component regulator propeller.
  
  0.811
SJZ57912.1
Histidine kinase.
 
   0.810
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.