STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ46904.1Putative ABC transport system ATP-binding protein. (237 aa)    
Predicted Functional Partners:
SKA18619.1
Putative ABC transport system permease protein.
 
 0.993
SKA18652.1
Putative ABC transport system permease protein.
 
 0.993
SJZ85425.1
Putative ABC transport system permease protein.
 
 0.992
SKA44150.1
Putative ABC transport system permease protein.
 
 0.992
SKA45790.1
Putative ABC transport system permease protein.
 
 0.992
SJZ72074.1
Putative ABC transport system permease protein.
  
 0.991
SKA03941.1
Hypothetical protein.
  
 0.991
SKA21171.1
Putative ABC transport system permease protein.
  0.988
SKA29543.1
Putative ABC transport system permease protein.
  0.980
SKA01741.1
Putative ABC transport system permease protein.
  0.938
Your Current Organism:
Chitinophaga eiseniae
NCBI taxonomy Id: 634771
Other names: C. eiseniae, Chitinophaga eiseniae Yasir et al. 2011, Chitinophaga sp. YC6729, DSM 22224, KACC 13774, strain YC6729
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