STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADG81137.1KEGG: drm:Dred_0184 hypothetical protein. (131 aa)    
Predicted Functional Partners:
ADG81138.1
PFAM: transcription factor CarD; KEGG: pth:PTH_0287 transcriptional regulator.
  
    0.614
ADG81304.1
KEGG: drm:Dred_1470 hypothetical protein.
  
     0.595
ADG82781.1
PFAM: Protein of unknown function DUF2225; KEGG: amt:Amet_3625 hypothetical protein.
  
    0.564
ADG82729.1
KEGG: dae:Dtox_2403 sporulation protein YtxC; TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC.
  
     0.520
ADG81149.1
Outer membrane protein-like protein; KEGG: bbe:BBR47_54170 hypothetical protein.
 
     0.489
ADG83520.1
PFAM: ubiquitin-associated- domain-containing protein; KEGG: ckr:CKR_1886 hypothetical protein.
  
     0.488
ADG81139.1
KEGG: hmo:HM1_1353 pin domain protein; PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc.
       0.477
ispD
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
       0.477
ADG83571.1
SMART: PDZ/DHR/GLGF domain protein; KEGG: dae:Dtox_3962 PDZ/DHR/GLGF domain protein.
  
     0.475
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.460
Your Current Organism:
Thermincola potens
NCBI taxonomy Id: 635013
Other names: T. potens JR, Thermincola potens JR, Thermincola potens str. JR, Thermincola potens strain JR, Thermincola sp. JR
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.