Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ADG83164.1 | ADG83174.1 | TherJR_2323 | TherJR_2333 | TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: dae:Dtox_1949 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein. | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | 0.603 |
ADG83174.1 | ADG83164.1 | TherJR_2333 | TherJR_2323 | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: dae:Dtox_1949 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein; GGDEF domain containing protein. | 0.603 |
ADG83174.1 | ADG83175.1 | TherJR_2333 | TherJR_2334 | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | PFAM: type IV pilus assembly PilZ; KEGG: tcu:Tcur_3033 glycine oxidase ThiO. | 0.415 |
ADG83174.1 | fliE | TherJR_2333 | TherJR_1543 | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | KEGG: aoe:Clos_1478 flagellar hook-basal body protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE. | 0.537 |
ADG83175.1 | ADG83174.1 | TherJR_2334 | TherJR_2333 | PFAM: type IV pilus assembly PilZ; KEGG: tcu:Tcur_3033 glycine oxidase ThiO. | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | 0.415 |
fliE | ADG83174.1 | TherJR_1543 | TherJR_2333 | KEGG: aoe:Clos_1478 flagellar hook-basal body protein FliE; TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE. | KEGG: dhd:Dhaf_3594 diguanylate phosphodiesterase; PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; SMART: EAL domain protein. | 0.537 |