STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH90634.1DNA packaging protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)    
Predicted Functional Partners:
AKH89038.1
Capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.972
AKH89039.1
Peptidase S14; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
 
  
 0.956
AKH88155.1
Tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.894
AKH88152.1
Tail sheath protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.891
AKH88151.1
Major tail tube protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.889
AKH88156.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.866
AKH88157.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.865
AKH88164.1
Tail protein X; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.860
AKH88158.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.851
AKH88147.1
Tail assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.847
Your Current Organism:
Edwardsiella tarda
NCBI taxonomy Id: 636
Other names: ATCC 15947, ATCC 23656, CIP 78.61, DSM 30052, E. tarda, Edwardsiella anguillimortifera, Edwardsiella sp. HMK1, Edwardsiella sp. PB46, LMG 2793, LMG:2793, NBRC 105688, NCCB 73021, NCTC 10396, Paracolobactrum anguillimortiferum
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