STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001550055_00506Unannotated protein. (926 aa)    
Predicted Functional Partners:
sucC
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
  
 
 0.948
GCA_001550055_02778
Unannotated protein; Belongs to the citrate synthase family.
  
 
 0.948
GCA_001550055_03042
Unannotated protein; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.933
mdh
Unannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.894
GCA_001550055_00507
Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 0.869
GCA_001550055_01923
Unannotated protein.
   
  
 0.867
GCA_001550055_03412
Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.832
GCA_001550055_00543
Unannotated protein.
  
 
 0.818
GCA_001550055_02001
Unannotated protein.
   
 
 0.817
sucD
Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 
 0.783
Your Current Organism:
Kordiimonas lacus
NCBI taxonomy Id: 637679
Other names: CGMCC 1.9109, JCM 16261, K. lacus, Kordiimonas lacus Xu et al. 2011 emend. Wu et al. 2016, Kordiimonas lacus Xu et al. 2011 emend. Yang et al. 2013, Kordiimonas sp. S3-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.