STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001550055_00971Unannotated protein. (426 aa)    
Predicted Functional Partners:
GCA_001550055_00970
Unannotated protein.
       0.780
fumC
Unannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.768
GCA_001550055_01432
Unannotated protein.
  
     0.764
GCA_001550055_02216
Unannotated protein.
  
     0.764
GCA_001550055_03382
Unannotated protein.
  
     0.763
GCA_001550055_02595
Unannotated protein.
  
     0.759
GCA_001550055_02624
Unannotated protein.
  
     0.751
GCA_001550055_03275
Unannotated protein.
  
     0.751
GCA_001550055_02638
Unannotated protein.
  
     0.747
GCA_001550055_02937
Unannotated protein.
  
     0.736
Your Current Organism:
Kordiimonas lacus
NCBI taxonomy Id: 637679
Other names: CGMCC 1.9109, JCM 16261, K. lacus, Kordiimonas lacus Xu et al. 2011 emend. Wu et al. 2016, Kordiimonas lacus Xu et al. 2011 emend. Yang et al. 2013, Kordiimonas sp. S3-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.