STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001550055_03220Unannotated protein. (167 aa)    
Predicted Functional Partners:
GCA_001550055_03221
Unannotated protein.
 
 
 0.972
GCA_001550055_03219
Unannotated protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.969
GCA_001550055_02588
Unannotated protein.
 
 
 0.881
GCA_001550055_02590
Unannotated protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
 
  0.871
GCA_001550055_03222
Unannotated protein.
       0.586
GCA_001550055_03217
Unannotated protein.
       0.529
bpt
Unannotated protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
       0.514
GCA_001550055_03223
Unannotated protein.
       0.409
Your Current Organism:
Kordiimonas lacus
NCBI taxonomy Id: 637679
Other names: CGMCC 1.9109, JCM 16261, K. lacus, Kordiimonas lacus Xu et al. 2011 emend. Wu et al. 2016, Kordiimonas lacus Xu et al. 2011 emend. Yang et al. 2013, Kordiimonas sp. S3-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.