Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001550055_00515 | GCA_001550055_02798 | GCA_001550055_00515 | GCA_001550055_02798 | Unannotated protein. | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.780 |
GCA_001550055_00515 | GCA_001550055_03441 | GCA_001550055_00515 | GCA_001550055_03441 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.428 |
GCA_001550055_00515 | GCA_001550055_03509 | GCA_001550055_00515 | GCA_001550055_03509 | Unannotated protein. | Unannotated protein. | 0.802 |
GCA_001550055_00515 | GCA_001550055_03512 | GCA_001550055_00515 | GCA_001550055_03512 | Unannotated protein. | Unannotated protein. | 0.838 |
GCA_001550055_00515 | folD | GCA_001550055_00515 | GCA_001550055_00435 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.499 |
GCA_001550055_00515 | gcvH | GCA_001550055_00515 | GCA_001550055_03511 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.782 |
GCA_001550055_00515 | gcvPA | GCA_001550055_00515 | GCA_001550055_03510 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.783 |
GCA_001550055_00515 | glyA | GCA_001550055_00515 | GCA_001550055_02688 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.799 |
GCA_001550055_00515 | sucC | GCA_001550055_00515 | GCA_001550055_01925 | Unannotated protein. | Unannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.782 |
GCA_001550055_01380 | GCA_001550055_02798 | GCA_001550055_01380 | GCA_001550055_02798 | Unannotated protein. | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.996 |
GCA_001550055_01380 | GCA_001550055_03509 | GCA_001550055_01380 | GCA_001550055_03509 | Unannotated protein. | Unannotated protein. | 0.436 |
GCA_001550055_01380 | GCA_001550055_03512 | GCA_001550055_01380 | GCA_001550055_03512 | Unannotated protein. | Unannotated protein. | 0.899 |
GCA_001550055_01380 | gcvPA | GCA_001550055_01380 | GCA_001550055_03510 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.422 |
GCA_001550055_01380 | glyA | GCA_001550055_01380 | GCA_001550055_02688 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.521 |
GCA_001550055_02798 | GCA_001550055_00515 | GCA_001550055_02798 | GCA_001550055_00515 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein. | 0.780 |
GCA_001550055_02798 | GCA_001550055_01380 | GCA_001550055_02798 | GCA_001550055_01380 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein. | 0.996 |
GCA_001550055_02798 | GCA_001550055_03441 | GCA_001550055_02798 | GCA_001550055_03441 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.820 |
GCA_001550055_02798 | GCA_001550055_03509 | GCA_001550055_02798 | GCA_001550055_03509 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein. | 0.678 |
GCA_001550055_02798 | GCA_001550055_03512 | GCA_001550055_02798 | GCA_001550055_03512 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein. | 0.938 |
GCA_001550055_02798 | folD | GCA_001550055_02798 | GCA_001550055_00435 | Unannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.651 |
page 1 of 5