STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_1518Tryptophan halogenase, putative. (504 aa)    
Predicted Functional Partners:
SVI_1519
Tryptophan halogenase, putative.
 
  
 
0.980
SVI_1019
Tryptophan halogenase, putative.
 
  
0.927
SVI_1520
TonB-dependent receptor.
 
     0.875
SVI_1020
SapC-related protein.
 
     0.778
SVI_1021
Hypothetical protein.
 
  
 0.767
SVI_1018
TonB-dependent receptor.
 
     0.759
SVI_1015
Transcriptional regulator, LacI family.
  
     0.616
SVI_1522
Sodium:galactoside symporter family protein.
  
     0.554
SVI_3546
TonB-dependent receptor.
  
     0.548
SVI_3303
Conserved hypothetical protein.
  
     0.539
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.