Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SVI_1761 | SVI_1762 | SVI_1761 | SVI_1762 | Voltage-gated potassium channel family. | MATE efflux family protein. | 0.438 |
SVI_1762 | SVI_1761 | SVI_1762 | SVI_1761 | MATE efflux family protein. | Voltage-gated potassium channel family. | 0.438 |
SVI_1762 | msrA-2 | SVI_1762 | SVI_2557 | MATE efflux family protein. | protein-methionine-S-oxide reductase, PilB family; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.407 |
SVI_1762 | rpsA | SVI_1762 | SVI_2074 | MATE efflux family protein. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.502 |
msrA-2 | SVI_1762 | SVI_2557 | SVI_1762 | protein-methionine-S-oxide reductase, PilB family; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | MATE efflux family protein. | 0.407 |
rpsA | SVI_1762 | SVI_2074 | SVI_1762 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MATE efflux family protein. | 0.502 |