STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_1806Chitinase. (985 aa)    
Predicted Functional Partners:
SVI_3206
Chitinase.
 
0.972
hex
Beta-hexosaminidase B precursor.
 
  
 0.971
chiA
Chitinase A.
 
  
0.942
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
  
 
 0.911
SVI_0801
Phosphotransferase enzyme family protein.
     
  0.900
SVI_1805
Chitodextrinase.
 
 
0.853
SVI_1808
Carbohydrate binding domain protein.
  
 
0.797
SVI_1807
Chitin-binding protein, putative.
 
     0.788
SVI_1094
Hypothetical protein.
 
 
 0.754
SVI_1922
Hypothetical protein.
 
 
 0.735
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.