STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_1891Conserved hypothetical protein. (123 aa)    
Predicted Functional Partners:
arsC
Arsenate reductase.
       0.800
SVI_1527
Conserved hypothetical protein.
  
     0.774
SVI_2035
Conserved hypothetical protein.
  
     0.773
SVI_2768
Conserved hypothetical protein.
  
     0.764
SVI_2759
Conserved hypothetical protein.
  
     0.760
SVI_3269
Conserved hypothetical protein.
  
     0.750
motX
Sodium-type flagellar protein MotX.
  
     0.746
SVI_3333
Conserved hypothetical protein.
  
     0.741
SVI_0333
Conserved hypothetical protein.
  
     0.727
SVI_0589
Conserved hypothetical protein.
  
     0.727
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.