STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_1963TonB-dependent siderophore receptor. (706 aa)    
Predicted Functional Partners:
SVI_4212
Lipoprotein, putative.
  
 
 0.784
SVI_2664
TonB-dependent heme/hemoglobin receptor.
  
  
 0.654
tonB2
TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.652
SVI_1320
TonB-dependent receptor.
  
  
 0.645
tonB1
TonB1 protein.
 
 
 0.617
SVI_4210
TonB-dependent receptor.
 
  
 0.614
SVI_2815
TonB-dependent heme receptor.
  
  
 0.577
SVI_3060
TonB-dependent receptor.
 
  
 0.573
SVI_2209
TonB-dependent receptor.
  
  
 0.551
viuA
Ferric vibriobactin receptor.
  
  
 0.532
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.