Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SVI_2000Type IV leader peptidase family. (195 aa)    
Predicted Functional Partners:
SVI_2002
Flp pilus assembly protein CpaB.
 
     0.861
SVI_2001
Conserved hypothetical protein.
 
   
 0.841
SVI_2003
Flp pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
     0.829
SVI_2010
Flp pilus assembly protein TadB.
 
   
 0.822
SVI_2009
Flp pilus assembly protein TadA.
 
   
 0.808
SVI_2011
Flp pilus assembly protein TadC.
 
   
 0.799
SVI_2007
Conserved hypothetical protein.
 
     0.788
SVI_2008
Hypothetical protein.
 
     0.786
SVI_2753
DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.755
SVI_1102
Flp pilus assembly protein TadA.
 
   
 0.748
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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