STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_2235Type III secretion system apparatus protein, HrcV family. (685 aa)    
Predicted Functional Partners:
SVI_2229
Type III secretion system EscS protein.
 
 
 0.991
SVI_2228
Type III secretion system apparatus protein, SpaR/YscT family.
 
 
 0.988
SVI_2230
Type III secretion system EscR protein.
 
 
 0.987
SVI_2241
Type III secretion system apparatus lipoprotein.
 
 
 0.981
SVI_2234
ATPase, FliI/YscN family.
 
  
 0.973
SVI_2227
Type III secretion system EscU protein.
 
  
 0.965
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
 
  
 0.937
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 0.921
fliI
Flagellum-specific ATP synthase FliI.
 
  
 0.895
SVI_2259
Type III secretion system apparatus protein, YscD/HrpQ family.
  
  
 0.891
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.