Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SVI_1753 | SVI_2332 | SVI_1753 | SVI_2332 | Conserved hypothetical protein. | Rhomboid family protein. | 0.515 |
SVI_1753 | SVI_2380 | SVI_1753 | SVI_2380 | Conserved hypothetical protein. | Glutamine amidotransferases class-II domain protein. | 0.635 |
SVI_1753 | amiB | SVI_1753 | SVI_0482 | Conserved hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.467 |
SVI_1753 | exsB | SVI_1753 | SVI_2331 | Conserved hypothetical protein. | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.969 |
SVI_1753 | folE | SVI_1753 | SVI_4064 | Conserved hypothetical protein. | GTP cyclohydrolase I. | 0.941 |
SVI_1753 | nrdG | SVI_1753 | SVI_2929 | Conserved hypothetical protein. | Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine. | 0.755 |
SVI_1753 | queE | SVI_1753 | SVI_2330 | Conserved hypothetical protein. | Radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.879 |
SVI_1753 | queF | SVI_1753 | SVI_1211 | Conserved hypothetical protein. | GTP cyclohydrolase I family protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.842 |
SVI_1923 | exsB | SVI_1923 | SVI_2331 | Molybdenum cofactor biosynthesis protein. | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.479 |
SVI_1923 | queF | SVI_1923 | SVI_1211 | Molybdenum cofactor biosynthesis protein. | GTP cyclohydrolase I family protein; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.440 |
SVI_2332 | SVI_1753 | SVI_2332 | SVI_1753 | Rhomboid family protein. | Conserved hypothetical protein. | 0.515 |
SVI_2332 | amiB | SVI_2332 | SVI_0482 | Rhomboid family protein. | N-acetylmuramoyl-L-alanine amidase. | 0.732 |
SVI_2332 | exsB | SVI_2332 | SVI_2331 | Rhomboid family protein. | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.784 |
SVI_2332 | queE | SVI_2332 | SVI_2330 | Rhomboid family protein. | Radical activating enzyme; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.522 |
SVI_2380 | SVI_1753 | SVI_2380 | SVI_1753 | Glutamine amidotransferases class-II domain protein. | Conserved hypothetical protein. | 0.635 |
SVI_2380 | exsB | SVI_2380 | SVI_2331 | Glutamine amidotransferases class-II domain protein. | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.635 |
SVI_2380 | folE | SVI_2380 | SVI_4064 | Glutamine amidotransferases class-II domain protein. | GTP cyclohydrolase I. | 0.629 |
amiB | SVI_1753 | SVI_0482 | SVI_1753 | N-acetylmuramoyl-L-alanine amidase. | Conserved hypothetical protein. | 0.467 |
amiB | SVI_2332 | SVI_0482 | SVI_2332 | N-acetylmuramoyl-L-alanine amidase. | Rhomboid family protein. | 0.732 |
amiB | exsB | SVI_0482 | SVI_2331 | N-acetylmuramoyl-L-alanine amidase. | exsB protein; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family. | 0.471 |
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