STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SVI_3228Thioesterase superfamily. (161 aa)    
Predicted Functional Partners:
pfaA
Omega-3 polyunsaturated fatty acid synthase PfaA.
 
 
 0.936
pfaC
Omega-3 polyunsaturated fatty acid synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.826
pfaB
Omega-3 polyunsaturated fatty acid synthase PfaB.
  
   0.700
SVI_4099
Thioesterase superfamily.
      
 0.629
SVI_0542
Conserved hypothetical protein.
  
     0.566
pfaD
Omega-3 polyunsaturated fatty acid synthase PfaD.
 
 
 
 0.501
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.464
SVI_3984
Hypothetical protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.463
SVI_0541
Conserved hypothetical protein.
  
     0.458
fabD
Malonyl CoA-acyl carrier protein transacylase.
  
 
 0.447
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.