STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepBPeptidase B; Probably plays an important role in intracellular peptide degradation. (425 aa)    
Predicted Functional Partners:
SVI_3324
Cytosol aminopeptidase, putative; Belongs to the peptidase M17 family.
  
 
 
0.931
pepD
Aminoacyl-histidine dipeptidase.
   
 
 0.931
pepA-1
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 
0.925
pepA-2
Cytosol aminopeptidase; Belongs to the peptidase M17 family.
  
  
 
0.922
gshB
Glutathione synthetase; Belongs to the prokaryotic GSH synthase family.
   
 
 0.916
pepN-1
Aminopeptidase N.
   
 0.909
pepN-2
Aminopeptidase N.
   
 0.909
ggt
Gamma-glutamyltranspeptidase.
     
 0.906
gshA
Glutamate--cysteine ligase; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.902
SVI_3488
Glutathione synthetase, putative.
     
  0.900
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.