Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SVI_1623 | SVI_3283 | SVI_1623 | SVI_3283 | Conserved hypothetical protein. | TPR domain protein; May be involved in cell division. | 0.748 |
SVI_1623 | dam | SVI_1623 | SVI_4004 | Conserved hypothetical protein. | DNA adenine methylase. | 0.471 |
SVI_1623 | metJ | SVI_1623 | SVI_3741 | Conserved hypothetical protein. | Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. | 0.745 |
SVI_1623 | mutH | SVI_1623 | SVI_0921 | Conserved hypothetical protein. | DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. | 0.667 |
SVI_1623 | proQ | SVI_1623 | SVI_1849 | Conserved hypothetical protein. | Protein proQ homolog; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.750 |
SVI_1623 | rraB | SVI_1623 | SVI_0346 | Conserved hypothetical protein. | Conserved hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.773 |
SVI_3283 | SVI_1623 | SVI_3283 | SVI_1623 | TPR domain protein; May be involved in cell division. | Conserved hypothetical protein. | 0.748 |
SVI_3283 | dam | SVI_3283 | SVI_4004 | TPR domain protein; May be involved in cell division. | DNA adenine methylase. | 0.492 |
SVI_3283 | metJ | SVI_3283 | SVI_3741 | TPR domain protein; May be involved in cell division. | Met repressor; This regulatory protein, when combined with SAM (S- adenosylmethionine) represses the expression of the methionine regulon and of enzymes involved in SAM synthesis. | 0.745 |
SVI_3283 | mutH | SVI_3283 | SVI_0921 | TPR domain protein; May be involved in cell division. | DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. | 0.583 |
SVI_3283 | proQ | SVI_3283 | SVI_1849 | TPR domain protein; May be involved in cell division. | Protein proQ homolog; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family. | 0.764 |
SVI_3283 | rraB | SVI_3283 | SVI_0346 | TPR domain protein; May be involved in cell division. | Conserved hypothetical protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. | 0.770 |
SVI_4005 | aroB | SVI_4005 | SVI_4006 | damX domain protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.875 |
SVI_4005 | aroK | SVI_4005 | SVI_4007 | damX domain protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.798 |
SVI_4005 | dam | SVI_4005 | SVI_4004 | damX domain protein. | DNA adenine methylase. | 0.707 |
aroB | SVI_4005 | SVI_4006 | SVI_4005 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | damX domain protein. | 0.875 |
aroB | aroK | SVI_4006 | SVI_4007 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.999 |
aroB | dam | SVI_4006 | SVI_4004 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | DNA adenine methylase. | 0.708 |
aroK | SVI_4005 | SVI_4007 | SVI_4005 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | damX domain protein. | 0.798 |
aroK | aroB | SVI_4007 | SVI_4006 | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.999 |
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