Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ROD_05431 | ROD_05441 | ROD_05431 | ROD_05441 | Putative membrane protein. | Putative membrane protein. | 0.966 |
ROD_05431 | ROD_05451 | ROD_05431 | ROD_05451 | Putative membrane protein. | Putative ABC transporter, ATP-binding protein. | 0.529 |
ROD_05431 | ROD_05461 | ROD_05431 | ROD_05461 | Putative membrane protein. | Putative membrane protein. | 0.578 |
ROD_05441 | ROD_05431 | ROD_05441 | ROD_05431 | Putative membrane protein. | Putative membrane protein. | 0.966 |
ROD_05441 | ROD_05451 | ROD_05441 | ROD_05451 | Putative membrane protein. | Putative ABC transporter, ATP-binding protein. | 0.630 |
ROD_05441 | ROD_05461 | ROD_05441 | ROD_05461 | Putative membrane protein. | Putative membrane protein. | 0.527 |
ROD_05441 | ROD_37271 | ROD_05441 | ROD_37271 | Putative membrane protein. | Conserved hypothetical protein. | 0.495 |
ROD_05441 | ROD_42801 | ROD_05441 | ROD_42801 | Putative membrane protein. | Putative protease. | 0.488 |
ROD_05441 | ROD_50381 | ROD_05441 | ROD_50381 | Putative membrane protein. | Conserved hypothetical protein; Belongs to the UPF0301 (AlgH) family. | 0.440 |
ROD_05441 | ftsH | ROD_05441 | ROD_46431 | Putative membrane protein. | Cell division protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.838 |
ROD_05441 | glpG | ROD_05441 | ROD_44001 | Putative membrane protein. | Putative membrane protein; Rhomboid-type serine protease that catalyzes intramembrane proteolysis. | 0.490 |
ROD_05441 | hflK | ROD_05441 | ROD_32341 | Putative membrane protein. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.437 |
ROD_05441 | nuoC | ROD_05441 | ROD_26881 | Putative membrane protein. | NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family. | 0.541 |
ROD_05451 | ROD_05431 | ROD_05451 | ROD_05431 | Putative ABC transporter, ATP-binding protein. | Putative membrane protein. | 0.529 |
ROD_05451 | ROD_05441 | ROD_05451 | ROD_05441 | Putative ABC transporter, ATP-binding protein. | Putative membrane protein. | 0.630 |
ROD_05451 | ROD_05461 | ROD_05451 | ROD_05461 | Putative ABC transporter, ATP-binding protein. | Putative membrane protein. | 0.984 |
ROD_05461 | ROD_05431 | ROD_05461 | ROD_05431 | Putative membrane protein. | Putative membrane protein. | 0.578 |
ROD_05461 | ROD_05441 | ROD_05461 | ROD_05441 | Putative membrane protein. | Putative membrane protein. | 0.527 |
ROD_05461 | ROD_05451 | ROD_05461 | ROD_05451 | Putative membrane protein. | Putative ABC transporter, ATP-binding protein. | 0.984 |
ROD_37271 | ROD_05441 | ROD_37271 | ROD_05441 | Conserved hypothetical protein. | Putative membrane protein. | 0.495 |
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