STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_09171Conserved hypothetical prophage protein. (84 aa)    
Predicted Functional Partners:
ROD_09151
Putative phage tail tube protein.
  
    0.806
ROD_09181
Conserved hypothetical prophage protein.
       0.800
ROD_09201
Conserved hypothetical prophage protein.
       0.800
ROD_09161
Putative phage tail sheath protein.
  
    0.792
ROD_09191
Conserved hypothetical prophage protein.
       0.787
ROD_09211
Conserved hypothetical prophage protein.
       0.783
ROD_09141
Hypothetical prophage protein.
       0.773
ROD_09221
Conserved hypothetical prophage protein.
       0.745
ROD_09291
Putative prophage membrane protein.
  
    0.494
ROD_09131
Conserved hypothetical prophage protein.
       0.461
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.