STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_13041Putative membrane protein. (495 aa)    
Predicted Functional Partners:
ROD_13031
ABC transporter, ATP-binding protein.
 
  
 0.962
ROD_13051
Putative exported protein.
 
  
 0.955
ROD_13061
Putative membrane protein.
 
   
 0.920
ROD_13011
Putative CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.800
ROD_13021
Putative thiosulfate sulfurtransferase.
 
   
 0.758
xthA
Exodeoxyribonuclease III.
       0.751
ROD_13901
Putative exported protein.
  
     0.740
ROD_42241
HlyD-family secretion protein.
  
     0.552
ROD_42231
Putative membrane protein.
  
     0.518
ROD_13081
Hypothetical protein.
       0.463
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.