STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_13291Putative phosphatase. (222 aa)    
Predicted Functional Partners:
ROD_26951
Putative phosphatase.
  
  
 0.965
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
    
 0.917
mtlA
Mannitol-specific PTS system EIICBA component.
  
 
  0.907
ROD_40181
Putative phosphatase.
  
     0.615
ROD_13301
Putative membrane protein.
 
     0.613
kduD
2-deoxy-d-gluconate 3-dehydrogenase.
   
   0.509
ROD_16931
Putative glycosyl hydrolase.
 
  
 0.477
nagE
N-acetylglucosamine-specific PTS system EIICBA components.
     
 0.445
ROD_13271
Putative membrane-bound metal-dependent hydrolase.
       0.416
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.