Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
narXNitrate/nitrite two-component sensor kinase. (598 aa)    
Predicted Functional Partners:
narL
Nitrate/nitrite two-component response regulator.
 
 0.999
narP
Nitrate/nitrite response regulator protein.
 
 
 0.940
narK
Nitrite extrusion protein.
 
  
 0.750
uhpA
Two-component system response regulator protein.
 
 
 0.705
uhpA-2
Two-component system response regulator.
 
 
 0.678
ROD_42891
Conserved hypothetical protein (pseudogene); Pseudogene, truncated by two frameshift mutations.
 
 
 0.670
narG
Respiratory nitrate reductase 1 alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
  
 0.596
dcuR
Two-component response regulator.
  
   
 0.585
uvrY
Response regulator.
 
 
 0.577
csgD
Probable CsgAB operon transcriptional regulator.
 
 
 0.553
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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