STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_19381Putative fimbrial subunit. (189 aa)    
Predicted Functional Partners:
ROD_19371
Putative fimbrial subunit.
   
 0.973
ROD_19361
Putative fimbrial chaperone protein.
 
 
 0.969
ROD_19351
Putative fimbrial usher protein.
  
 0.945
ROD_19341
Putative fimbrial adhesin.
 
   
 0.938
dam-5
Putative prophage DNA adenine methylase.
  
     0.669
ROD_48151
Putative outer membrane efflux protein of T1SS.
  
     0.620
ROD_43641
Putative membrane protein.
  
    0.613
ROD_08251
Putative membrane protein.
  
     0.596
ogl
Oligogalacturonate lyase.
  
     0.525
tar
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein).
       0.500
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.