STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_24321Putative transporter. (237 aa)    
Predicted Functional Partners:
ROD_24311
Putative transporter.
 
    0.967
iadA
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation.
 
    0.876
ROD_06081
Putative membrane protein.
 
    0.860
dcuD
C4-dicarboxylate transporter.
  
     0.675
ROD_06071
Putative carboxypeptidase g2.
 
     0.640
nrfD
Cytochrome c-type biogenesis protein.
  
     0.560
perM
Putative permease.
  
    0.527
csgB
Minor curlin subunit.
  
     0.523
nrfB
Cytochrome c-type protein.
  
     0.508
ROD_24341
Hypothetical protein.
       0.487
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.