STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_25931Hypothetical prophage protein. (116 aa)    
Predicted Functional Partners:
ROD_25921
Hypothetical prophage protein.
       0.800
ROD_25951
Putative phage capsid protein.
       0.799
ROD_25911
Hypothetical prophage protein.
       0.792
ROD_25901
Putative phage tail sheath protein.
       0.788
ROD_25891
Hypothetical prophage protein.
       0.778
ROD_25881
Hypothetical prophage protein.
       0.773
ROD_25941
Hypothetical prophage protein.
       0.773
ROD_25961
Hypothetical prophage protein.
       0.588
ROD_25971
Putative prophage exported protein.
       0.587
ROD_25991
Putative phage portal protein.
       0.586
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.