Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ROD_26041Hypothetical prophage protein; Similar to P1 PmgQ with putative morphogenetic function. (221 aa)    
Predicted Functional Partners:
ROD_26051
Hypothetical prophage protein; Similar to P1 PmgP with putative morphogenetic function.
       0.773
ROD_26061
Hypothetical prophage protein; Similar to P1 PmgO with putative morphogenetic function.
       0.773
ROD_26031
Hypothetical prophage protein.
       0.768
ROD_48801
IS3 family transposase B (fragment); HMMPfam hit to PF00665, Integrase, catalytic core,score 7.8e-27.
  
     0.728
dsbL
Thiol:disulfide interchange protein; Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Part of a redox system composed of DsbI and DsbL that mediates formation of an essential disulfide bond in AssT.
  
     0.562
espX7
Putative T3SS effector protein EspX7; Homologue of ECs1560 found on Sp6.
  
     0.546
ROD_12311
Putative exported protein.
  
     0.545
fliB
Flagellin lysine-N-methylase.
  
     0.544
ROD_31541
GntR-family transcriptional regulator.
  
     0.532
frlB
Fructoselysine 6-phosphate deglycase.
  
     0.509
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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