Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dam-6Putative prophage DNA adenine methylase. (293 aa)    
Predicted Functional Partners:
dam-2
Putative prophage DNA adenine methylase.
  
  
  0.919
dam-7
DNA adenine methylase.
  
  
  0.914
ROD_26321
Hypothetical prophage protein.
 
    0.821
dinF
DNA-damage-inducible protein F; Missing the first 19 aa conserved in other enterics.
      
 0.583
ROD_26311
Putative phage integrase; Belongs to the 'phage' integrase family.
  
    0.561
ROD_26302
Hypothetical prophage protein.
       0.554
ROD_26281
Putative prophage DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.462
Q
Putative capsid portal protein.
  
    0.447
ROD_25961
Hypothetical prophage protein.
 
    0.433
ROD_09161
Putative phage tail sheath protein.
 
    0.415
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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