STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROD_27631Putative outer membrane autotransporter. (969 aa)    
Predicted Functional Partners:
cts1N
T6SS protein Cts1N; Similar to SciN, putative lipoprotein component of T6SS.
  
     0.713
ROD_35071
ABC transporter ATP-binding/permease protein.
  
    0.711
dam-5
Putative prophage DNA adenine methylase.
  
     0.673
lafZ
Lateral flagellar transmembrane regulator.
  
     0.667
wzy
Putative O-antigen polymerase Wzy.
  
     0.658
ROD_35181
Putative transcriptional regulator.
  
     0.650
ROD_27801
Putative fimbrial subunit.
  
     0.610
wzzB
Chain length determinant protein.
  
     0.602
cts1O
T6SS protein Cts1O.
  
     0.600
cts1D
T6SS lysozyme-related protein Cts1D; SciD homologue, component of T6SS.
 
     0.597
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.