STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ROD_30721Putative 4-hydroxybenzoate decarboxylase subunit D. (78 aa)    
Predicted Functional Partners:
ROD_30711
Putative 4-hydroxybenzoate decarboxylase subunit C; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives.
 
  
  0.993
ROD_30701
Putative 4-hydroxybenzoate decarboxylase subunit B; Involved in the non-oxidative decarboxylation and detoxification of phenolic derivatives. Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for phenolic acid decarboxylase.
 
  
 0.982
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
  
 0.921
ROD_31661
Conserved hypothetical protein.
     
  0.800
hosA
MarR-family transcriptional regulator.
 
     0.768
ROD_04151
Putative outer membrane autotransporter.
  
     0.734
ROD_05701
Putative tetR-family transcriptional regulator.
  
     0.624
ROD_15841
Putative outer membrane protein.
  
     0.623
ecnR
Transcriptional regulatory protein EntR (Entericidin R).
  
     0.563
alaE
Putative membrane protein; Exports L-alanine; Belongs to the AlaE exporter family.
  
     0.562
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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