Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROD_32081Putative lipoprotein. (123 aa)    
Predicted Functional Partners:
ROD_14601
Putative exported protein.
  
     0.773
ROD_19701
Conserved hypothetical protein.
  
     0.773
ROD_18811
DNA polymerase III, theta subunit.
  
     0.771
ompX
Outer membrane protein X.
  
     0.767
ROD_38271
Putative exported protein.
  
     0.758
ROD_29291
Similar to a family of outer membrane proteins involved in virulence, including Ail, Rck and PagC.
  
     0.755
ROD_23121
Conserved hypothetical protein.
  
     0.753
ROD_47881
Putative membrane protein.
  
     0.752
ROD_17501
Putative outer membrane protein.
  
     0.751
ROD_46291
Putative anti-sigma factor antagonist.
  
     0.749
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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