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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G-2Phage tail fibre assembly protein. (177 aa)    
Predicted Functional Partners:
H
Phage tail fibre protein.
  
  
 0.867
I
Phage tail protein.
  
  
 0.864
W
Phage baseplate assembly protein W.
  
    0.860
J
Phage baseplate assembly protein J.
  
  
 0.855
V
Phage tail spike protein.
  
  
 0.852
S
Phage tail completion protein S.
       0.795
R
Phage tail completion protein R.
       0.795
X
Putative phage tail protein.
  
    0.630
ROD_36701
Putative phage lysozyme.
  
    0.540
ROD_36691
Putative prophage lipoprotein.
       0.487
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.